;"Systematic Name";"Gene Name";"Motif ID";"Expert Confidence";"Dubious?";"Notes"
;"YBL103C";"RTG3";"1446";"Low";"";"Only the PBM motif is a classic HLH motif.  Three different ChIP-chip-derived motifs are all diverse, but all score highly on ChIP-chip data!  Are they motifs of other TFs?  Check.  602: GCN4; 1095, TEC1; 1096: resembles 602, but is a closer match to CUP9/TOS8.  Also hits GCN4. According to the literature (PMID: 9032238) the core binding site for the Rtg1p-Rtg3p heterodimer is 5\'-GGTCAC-3\'; the only motif that resembles this is 1446.  Vague resemblance to 602 and 1096.  I am going to retain 1446, which represents the literature site; PBM motif 870, which resembles an E-box, and ChIP-chip motif 1445, which scores highest on ChIP-chip data.  But give all low confidence."
;"YBL103C";"RTG3";"1445";"Low";"";"Only the PBM motif is a classic HLH motif.  Three different ChIP-chip-derived motifs are all diverse, but all score highly on ChIP-chip data!  Are they motifs of other TFs?  Check.  602: GCN4; 1095, TEC1; 1096: resembles 602, but is a closer match to CUP9/TOS8.  Also hits GCN4. According to the literature (PMID: 9032238) the core binding site for the Rtg1p-Rtg3p heterodimer is 5\'-GGTCAC-3\'; the only motif that resembles this is 1446.  Vague resemblance to 602 and 1096.  I am going to retain 1446, which represents the literature site; PBM motif 870, which resembles an E-box, and ChIP-chip motif 1445, which scores highest on ChIP-chip data.  But give all low confidence."
;"YBL103C";"RTG3";"870";"Low";"";"Only the PBM motif is a classic HLH motif.  Three different ChIP-chip-derived motifs are all diverse, but all score highly on ChIP-chip data!  Are they motifs of other TFs?  Check.  602: GCN4; 1095, TEC1; 1096: resembles 602, but is a closer match to CUP9/TOS8.  Also hits GCN4. According to the literature (PMID: 9032238) the core binding site for the Rtg1p-Rtg3p heterodimer is 5\'-GGTCAC-3\'; the only motif that resembles this is 1446.  Vague resemblance to 602 and 1096.  I am going to retain 1446, which represents the literature site; PBM motif 870, which resembles an E-box, and ChIP-chip motif 1445, which scores highest on ChIP-chip data.  But give all low confidence."