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V |
Abdel-Sater F, Iraqui I, Urrestarazu A, André B. The external amino acid signaling pathway promotes activation of Stp1 and Uga35/Dal81 transcription factors for induction of the AGP1 gene in Saccharomyces cerevisiae. Genetics. 2004 Apr;166(4):1727-39. |
2004 |
single site mutagenesis and knockout |
15126393 |
2 |
V |
Acton TB, Zhong H, Vershon AK. DNA-binding specificity of Mcm1: operator mutations that alter DNA-bending and transcriptional activities by a MADS box protein. Mol Cell Biol. 1997 Apr;17(4):1881-9. |
1997 |
Mutational analysis |
9121436 |
2 |
V |
Akache B, Turcotte B. New regulators of drug sensitivity in the family of yeast zinc cluster proteins. J Biol Chem. 2002 Jun 14;277(24):21254-60. Epub 2002 Apr 9. |
2002 |
EMSA, single site mutagenesis |
11943786 |
1 |
V |
Avram D, Leid M, Bakalinsky AT. Fzf1p of Saccharomyces cerevisiae is a positive regulator of SSU1 transcription and its first zinc finger region is required for DNA binding. Yeast. 1999 Apr;15(6):473-80. |
1999 |
EMSA, site-turns-on-gene, DNase protection |
10234785 |
1 |
V |
Badis G, Chan ET, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson CD, Gossett AJ, Hasinoff MJ, Warren CL, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo ZX, Clarke ND, Lieb JD, Ansari AZ, Nislow C, Hughes TR. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol Cell. 2008 Dec 26;32(6):878-87. |
2008 |
PBM |
19111667 |
114 |
V |
Baker CR, Tuch BB, Johnson AD. Extensive DNA-binding specificity divergence of a conserved transcription regulator. Proc Natl Acad Sci U S A. 2011 May 3;108(18):7493-8. Epub 2011 Apr 15. |
2011 |
Sites found in coregulated genes' promoters, and in orthologous promoters |
21498688 |
1 |
V |
Barbaric S, Münsterkötter M, Goding C, Hörz W. Cooperative Pho2-Pho4 interactions at the PHO5 promoter are critical for binding of Pho4 to UASp1 and for efficient transactivation by Pho4 at UASp2. Mol Cell Biol. 1998 May;18(5):2629-39. |
1998 |
EMSA, DNase protection, DMS footprinting |
9566882 |
1 |
V |
Becker B, Feller A, el Alami M, Dubois E, Piérard A. A nonameric core sequence is required upstream of the LYS genes of Saccharomyces cerevisiae for Lys14p-mediated activation and apparent repression by lysine. Mol Microbiol. 1998 Jul;29(1):151-63. |
1998 |
EMSA, mutational analysis, multiple site analysis |
9701810 |
1 |
V |
Berger MF, Philippakis AA, Qureshi AM, He FS, Estep PW 3rd, Bulyk ML. Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities. Nat Biotechnol. 2006 Nov;24(11):1429-35. Epub 2006 Sep 24. |
2006 |
PBM |
16998473 |
2 |
V |
Blaiseau PL, Thomas D. Multiple transcriptional activation complexes tether the yeast activator Met4 to DNA. EMBO J. 1998 Nov 2;17(21):6327-36. |
1998 |
EMSA, |
9799240 |
2 |
V |
Bonham AJ, Neumann T, Tirrell M, Reich NO. Tracking transcription factor complexes on DNA using total internal reflectance fluorescence protein binding microarrays. Nucleic Acids Res. 2009 Jul;37(13):e94. Epub 2009 May 31. |
2009 |
TIRF-PBM |
19487241 |
5 |
V |
Boorsma A, de Nobel H, ter Riet B, Bargmann B, Brul S, Hellingwerf KJ, Klis FM. Characterization of the transcriptional response to cell wall stress in Saccharomyces cerevisiae. Yeast. 2004 Apr 15;21(5):413-27. |
2004 |
microArray Enrichment |
15116342 |
1 |
V |
Challice JM, Segall J. Transcription of the 5 S rRNA gene of Saccharomyces cerevisiae requires a promoter element at +1 and a 14-base pair internal control region. J Biol Chem. 1989 Nov 25;264(33):20060-7. |
1989 |
Methylation protection, single site analysis |
2684967 |
1 |
V |
Chen X, Guo L, Fan Z, Jiang T. W-AlignACE: an improved Gibbs sampling algorithm based on more accurate position weight matrices learned from sequence and gene expression/ChIP-chip data. Bioinformatics. 2008 May 1;24(9):1121-8. Epub 2008 Mar 5. |
2008 |
ChIP-chip |
18325926 |
33 |
V |
Chu S, Herskowitz I. Gametogenesis in yeast is regulated by a transcriptional cascade dependent on Ndt80. Mol Cell. 1998 Apr;1(5):685-96. |
1998 |
EMSA, mutational analysis, multiple site analysis |
9660952 |
2 |