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| V |
Baker CR, Tuch BB, Johnson AD. Extensive DNA-binding specificity divergence of a conserved transcription regulator. Proc Natl Acad Sci U S A. 2011 May 3;108(18):7493-8. Epub 2011 Apr 15. |
2011 |
Sites found in coregulated genes' promoters, and in orthologous promoters |
21498688 |
1 |
| V |
Mira NP, Henriques SF, Keller G, Teixeira MC, Matos RG, Arraiano CM, Winge DR, Sá-Correia I. Identification of a DNA-binding site for the transcription factor Haa1, required for Saccharomyces cerevisiae response to acetic acid stress. Nucleic Acids Res. 2011 May 17. [Epub ahead of print] |
2011 |
EMSA, motif finding in co regulated genes |
21586585 |
1 |
| V |
Ghosh S, Pugh BF. Sequential recruitment of SAGA and TFIID in a genomic response to DNA damage in Saccharomyces cerevisiae. Mol Cell Biol. 2011 Jan;31(1):190-202. Epub 2010 Oct 18. |
2011 |
ChIP-chip |
20956559 |
1 |
| V |
Li D, Dong Y, Jiang Y, Jiang H, Cai J, Wang W. A de novo originated gene depresses budding yeast mating pathway and is repressed by the protein encoded by its antisense strand. Cell Res. 2010 Apr;20(4):408-20. Epub 2010 Mar 2. |
2010 |
EMSA |
20195295 |
1 |
| V |
Heise B, van der Felden J, Kern S, Malcher M, Brückner S, Mösch HU. The TEA transcription factor Tec1 confers promoter-specific gene regulation by Ste12-dependent and -independent mechanisms. Eukaryot Cell. 2010 Apr;9(4):514-31. Epub 2010 Jan 29. |
2010 |
EMSA |
20118212 |
1 |
| V |
Lahav R, Gammie A, Tavazoie S, Rose MD. Role of transcription factor Kar4 in regulating downstream events in the Saccharomyces cerevisiae pheromone response pathway. Mol Cell Biol. 2007 Feb;27(3):818-29. Epub 2006 Nov 13. |
2007 |
microArray Enrichment |
17101777 |
1 |
| V |
Ho SW, Jona G, Chen CT, Johnston M, Snyder M. Linking DNA-binding proteins to their recognition sequences by using protein microarrays. Proc Natl Acad Sci U S A. 2006 Jun 27;103(26):9940-5. Epub 2006 Jun 19. |
2006 |
Protein Microarrays |
16785442 |
1 |
| V |
Weider M, Machnik A, Klebl F, Sauer N. Vhr1p, a new transcription factor from budding yeast, regulates biotin-dependent expression of VHT1 and BIO5. J Biol Chem. 2006 May 12;281(19):13513-24. Epub 2006 Mar 13. |
2006 |
One-hybrid, tiling deletion of conserved site |
16533810 |
1 |
| V |
Yamamoto A, Mizukami Y, Sakurai H. Identification of a novel class of target genes and a novel type of binding sequence of heat shock transcription factor in Saccharomyces cerevisiae. J Biol Chem. 2005 Mar 25;280(12):11911-9. Epub 2005 Jan 11. |
2005 |
microArray Enrichment |
15647283 |
1 |
| V |
Sarver A, DeRisi J. Fzf1p regulates an inducible response to nitrosative stress in Saccharomyces cerevisiae. Mol Biol Cell. 2005 Oct;16(10):4781-91. Epub 2005 Jul 12. |
2005 |
comparative genomics |
16014606 |
1 |
| V |
Gertz J, Riles L, Turnbaugh P, Ho SW, Cohen BA. Discovery, validation, and genetic dissection of transcription factor binding sites by comparative and functional genomics. Genome Res. 2005 Aug;15(8):1145-52. |
2005 |
Expression enrichment, Y1H, EMSA |
16077013 |
1 |
| V |
Eriksson PR, Mendiratta G, McLaughlin NB, Wolfsberg TG, Mariño-Ramírez L, Pompa TA, Jainerin M, Landsman D, Shen CH, Clark DJ. Global regulation by the yeast Spt10 protein is mediated through chromatin structure and the histone upstream activating sequence elements. Mol Cell Biol. 2005 Oct;25(20):9127-37. |
2005 |
ChIP, EMSA |
16199888 |
1 |
| V |
Mukherjee S, Berger MF, Jona G, Wang XS, Muzzey D, Snyder M, Young RA, Bulyk ML. Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays. Nat Genet. 2004 Dec;36(12):1331-9. Epub 2004 Nov 14. |
2004 |
PBM |
15543148 |
1 |
| V |
Kim TS, Lee SB, Kang HS. Glucose repression of STA1 expression is mediated by the Nrg1 and Sfl1 repressors and the Srb8-11 complex. Mol Cell Biol. 2004 Sep;24(17):7695-706. |
2004 |
single site mutagenesis and knockout |
15314176 |
1 |
| V |
Moqtaderi Z, Struhl K. Genome-wide occupancy profile of the RNA polymerase III machinery in Saccharomyces cerevisiae reveals loci with incomplete transcription complexes. Mol Cell Biol. 2004 May;24(10):4118-27. |
2004 |
ChIP-chip |
15121834 |
1 |
