ReferenceYearDescriptionPMID#Motifs in DB
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Iraqui I, Vissers S, André B, Urrestarazu A. Transcriptional induction by aromatic amino acids in Saccharomyces cerevisiae. Mol Cell Biol. 1999 May;19(5):3360-71.1999single site mutagenesis, multiple promoter analysis (2)102070601
Avram D, Leid M, Bakalinsky AT. Fzf1p of Saccharomyces cerevisiae is a positive regulator of SSU1 transcription and its first zinc finger region is required for DNA binding. Yeast. 1999 Apr;15(6):473-80.1999EMSA, site-turns-on-gene, DNase protection102347851
Mannhaupt G, Schnall R, Karpov V, Vetter I, Feldmann H. Rpn4p acts as a transcription factor by binding to PACE, a nonamer box found upstream of 26S proteasomal and other genes in yeast. FEBS Lett. 1999 Apr 30;450(1-2):27-34.1999one-hybrid, EMSA, 103500511
Idrissi FZ, Piña B. Functional divergence between the half-sites of the DNA-binding sequence for the yeast transcriptional regulator Rap1p. Biochem J. 1999 Aug 1;341 ( Pt 3):477-82.1999KMnO4 footprinting, 104173081
Zhu J, Zhang MQ. SCPD: a promoter database of the yeast Saccharomyces cerevisiae. Bioinformatics. 1999 Jul-Aug;15(7-8):607-11.1999alignments of various mapped sites1048786820
Foti DM, Welihinda A, Kaufman RJ, Lee AS. Conservation and divergence of the yeast and mammalian unfolded protein response. Activation of specific mammalian endoplasmic reticulum stress element of the grp78/BiP promoter by yeast Hac1. J Biol Chem. 1999 Oct 22;274(43):30402-9.1999EMSA, DNase protection105214171
Jang YK, Wang L, Sancar GB. RPH1 and GIS1 are damage-responsive repressors of PHR1. Mol Cell Biol. 1999 Nov;19(11):7630-8.1999EMSA, DNase protection, one-hybrid105236512
Xie J, Pierce M, Gailus-Durner V, Wagner M, Winter E, Vershon AK. Sum1 and Hst1 repress middle sporulation-specific gene expression during mitosis in Saccharomyces cerevisiae. EMBO J. 1999 Nov 15;18(22):6448-54.1999EMSA, site-turns-on-gene105625561
Jung US, Levin DE. Genome-wide analysis of gene expression regulated by the yeast cell wall integrity signalling pathway. Mol Microbiol. 1999 Dec;34(5):1049-57.1999related protein promoter analysis, mini-array105948291
Sato T, Lopez MC, Sugioka S, Jigami Y, Baker HV, Uemura H. The E-box DNA binding protein Sgc1p suppresses the gcr2 mutation, which is involved in transcriptional activation of glycolytic genes in Saccharomyces cerevisiae. FEBS Lett. 1999 Dec 17;463(3):307-11.1999DNase footprinting106067431
de Boer M, Nielsen PS, Bebelman JP, Heerikhuizen H, Andersen HA, Planta RJ. Stp1p, Stp2p and Abf1p are involved in regulation of expression of the amino acid transporter gene BAP3 of Saccharomyces cerevisiae. Nucleic Acids Res. 2000 Feb 15;28(4):974-81.2000EMSA, mutational analysis106487911
Kunoh T, Kaneko Y, Harashima S. YHP1 encodes a new homeoprotein that binds to the IME1 promoter in Saccharomyces cerevisiae. Yeast. 2000 Mar 30;16(5):439-49.2000EMSA, one-hybrid107053721
Taylor IA, McIntosh PB, Pala P, Treiber MK, Howell S, Lane AN, Smerdon SJ. Characterization of the DNA-binding domains from the yeast cell-cycle transcription factors Mbp1 and Swi4. Biochemistry. 2000 Apr 11;39(14):3943-54.2000NMR107477821
Garcia-Gimeno MA, Struhl K. Aca1 and Aca2, ATF/CREB activators in Saccharomyces cerevisiae, are important for carbon source utilization but not the response to stress. Mol Cell Biol. 2000 Jun;20(12):4340-9.2000in vitro binding assay, mutational analysis108251972
Pedruzzi I, Bürckert N, Egger P, De Virgilio C. Saccharomyces cerevisiae Ras/cAMP pathway controls post-diauxic shift element-dependent transcription through the zinc finger protein Gis1. EMBO J. 2000 Jun 1;19(11):2569-79.2000site-turns-on-gene, one-hybrid108353551
Koering CE, Fourel G, Binet-Brasselet E, Laroche T, Klein F, Gilson E. Identification of high affinity Tbf1p-binding sites within the budding yeast genome. Nucleic Acids Res. 2000 Jul 1;28(13):2519-26.2000in vitro selection (CAST), confirmed with EMSA108714011
Raitt DC, Johnson AL, Erkine AM, Makino K, Morgan B, Gross DS, Johnston LH. The Skn7 response regulator of Saccharomyces cerevisiae interacts with Hsf1 in vivo and is required for the induction of heat shock genes by oxidative stress. Mol Biol Cell. 2000 Jul;11(7):2335-47.2000EMSA, site-turns-on-gene, mutational analysis108886721
Zhu G, Spellman PT, Volpe T, Brown PO, Botstein D, Davis TN, Futcher B. Two yeast forkhead genes regulate the cell cycle and pseudohyphal growth. Nature. 2000 Jul 6;406(6791):90-4.2000SAAB, ChIP108945482
Zhu G, Spellman PT, Volpe T, Brown PO, Botstein D, Davis TN, Futcher B. Two yeast forkhead genes regulate the cell cycle and pseudohyphal growth. Nature. 2000 Jul 6;406(6791):90-4.2000SAAB108945481
Pic A, Lim FL, Ross SJ, Veal EA, Johnson AL, Sultan MR, West AG, Johnston LH, Sharrocks AD, Morgan BA. The forkhead protein Fkh2 is a component of the yeast cell cycle transcription factor SFF. EMBO J. 2000 Jul 17;19(14):3750-61.2000EMSA, mutational analysis, expression enrichment108991281
Nguyên DT, Alarco AM, Raymond M. Multiple Yap1p-binding sites mediate induction of the yeast major facilitator FLR1 gene in response to drugs, oxidants, and alkylating agents. J Biol Chem. 2001 Jan 12;276(2):1138-45.2001EMSA, site mutation110561651
Pascual-Ahuir A, Serrano R, Proft M. The Sko1p repressor and Gcn4p activator antagonistically modulate stress-regulated transcription in Saccharomyces cerevisiae. Mol Cell Biol. 2001 Jan;21(1):16-25.2001EMSA, site-turns-on-gene111131772
Maxon ME, Herskowitz I. Ash1p is a site-specific DNA-binding protein that actively represses transcription. Proc Natl Acad Sci U S A. 2001 Feb 13;98(4):1495-500.2001EMSA, DNase footprinting, single site mutagenesis111719791
Iyer VR, Horak CE, Scafe CS, Botstein D, Snyder M, Brown PO. Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF. Nature. 2001 Jan 25;409(6819):533-8.2001ChIP-chip112065522
Nielsen PS, van den Hazel B, Didion T, de Boer M, Jørgensen M, Planta RJ, Kielland-Brandt MC, Andersen HA. Transcriptional regulation of the Saccharomyces cerevisiae amino acid permease gene BAP2. Mol Gen Genet. 2001 Jan;264(5):613-22.2001EMSA, site-turns-on-gene, one-hybrid, 112129161
Wieland G, Hemmerich P, Koch M, Stoyan T, Hegemann J, Diekmann S. Determination of the binding constants of the centromere protein Cbf1 to all 16 centromere DNAs of Saccharomyces cerevisiae. Nucleic Acids Res. 2001 Mar 1;29(5):1054-60.2001EMSA, kinetic analysis112227541
Conlan RS, Tzamarias D. Sfl1 functions via the co-repressor Ssn6-Tup1 and the cAMP-dependent protein kinase Tpk2. J Mol Biol. 2001 Jun 22;309(5):1007-15.2001EMSA, ChIP113990751
Lieb JD, Liu X, Botstein D, Brown PO. Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association. Nat Genet. 2001 Aug;28(4):327-34.2001ChIP-chip114553861
Mendizabal I, Pascual-Ahuir A, Serrano R, de Larrinoa IF. Promoter sequences regulated by the calcineurin-activated transcription factor Crz1 in the yeast ENA1 gene. Mol Genet Genomics. 2001 Jul;265(5):801-11.2001EMSA115237972
Vik A, Rine J. Upc2p and Ecm22p, dual regulators of sterol biosynthesis in Saccharomyces cerevisiae. Mol Cell Biol. 2001 Oct;21(19):6395-405.2001EMSA, site-turns-on-gene115332292
Miura F, Yada T, Nakai K, Sakaki Y, Ito T. Differential display analysis of mutants for the transcription factor Pdr1p regulating multidrug resistance in the budding yeast. FEBS Lett. 2001 Sep 7;505(1):103-8.2001HT FDD PCR (transcript enrichment)115570502
Rutherford JC, Jaron S, Ray E, Brown PO, Winge DR. A second iron-regulatory system in yeast independent of Aft1p. Proc Natl Acad Sci U S A. 2001 Dec 4;98(25):14322-7.2001EMSA of related protein's known BS117346411
Newcomb LL, Hall DD, Heideman W. AZF1 is a glucose-dependent positive regulator of CLN3 transcription in Saccharomyces cerevisiae. Mol Cell Biol. 2002 Mar;22(5):1607-14.2002EMSA, ChIP, single binding site118398251
Li S, Dean S, Li Z, Horecka J, Deschenes RJ, Fassler JS. The eukaryotic two-component histidine kinase Sln1p regulates OCH1 via the transcription factor, Skn7p. Mol Biol Cell. 2002 Feb;13(2):412-24.2002EMSA118544001
Hellauer K, Akache B, MacPherson S, Sirard E, Turcotte B. Zinc cluster protein Rdr1p is a transcriptional repressor of the PDR5 gene encoding a multidrug transporter. J Biol Chem. 2002 May 17;277(20):17671-6. Epub 2002 Mar 6.2002Enrichment in Deletion-up regulated promoters118826651
Le Crom S, Devaux F, Marc P, Zhang X, Moye-Rowley WS, Jacq C. New insights into the pleiotropic drug resistance network from genome-wide characterization of the YRR1 transcription factor regulation system. Mol Cell Biol. 2002 Apr;22(8):2642-9.2002microArray Enrichment, EMSA119099581
Akache B, Turcotte B. New regulators of drug sensitivity in the family of yeast zinc cluster proteins. J Biol Chem. 2002 Jun 14;277(24):21254-60. Epub 2002 Apr 9.2002EMSA, single site mutagenesis119437861
Spode I, Maiwald D, Hollenberg CP, Suckow M. ATF/CREB sites present in sub-telomeric regions of Saccharomyces cerevisiae chromosomes are part of promoters and act as UAS/URS of highly conserved COS genes. J Mol Biol. 2002 May 31;319(2):407-20.2002alignments of various sites under same control120519172
Yoshimoto H, Saltsman K, Gasch AP, Li HX, Ogawa N, Botstein D, Brown PO, Cyert MS. Genome-wide analysis of gene expression regulated by the calcineurin/Crz1p signaling pathway in Saccharomyces cerevisiae. J Biol Chem. 2002 Aug 23;277(34):31079-88. Epub 2002 Jun 10.2002Expression enrichment by microarray, and SELEX120580332
Idicula AM, Blatch GL, Cooper TG, Dorrington RA. Binding and activation by the zinc cluster transcription factors of Saccharomyces cerevisiae. Redefining the UASGABA and its interaction with Uga3p. J Biol Chem. 2002 Nov 29;277(48):45977-83. Epub 2002 Sep 13.2002EMSA, mutational analysis122351301
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Mamnun YM, Pandjaitan R, Mahé Y, Delahodde A, Kuchler K. The yeast zinc finger regulators Pdr1p and Pdr3p control pleiotropic drug resistance (PDR) as homo- and heterodimers in vivo. Mol Microbiol. 2002 Dec;46(5):1429-40.2002DNase footprinting124532272
Pramila T, Miles S, GuhaThakurta D, Jemiolo D, Breeden LL. Conserved homeodomain proteins interact with MADS box protein Mcm1 to restrict ECB-dependent transcription to the M/G1 phase of the cell cycle. Genes Dev. 2002 Dec 1;16(23):3034-45.2002microArray Enrichment124646332
Lamb TM, Mitchell AP. The transcription factor Rim101p governs ion tolerance and cell differentiation by direct repression of the regulatory genes NRG1 and SMP1 in Saccharomyces cerevisiae. Mol Cell Biol. 2003 Jan;23(2):677-86.2003microArray Enrichment, ChIP125094651
Hikkel I, Lucau-Danila A, Delaveau T, Marc P, Devaux F, Jacq C. A general strategy to uncover transcription factor properties identifies a new regulator of drug resistance in yeast. J Biol Chem. 2003 Mar 28;278(13):11427-32. Epub 2003 Jan 14.2003ChIP, microarray Enrichment125293311
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Rottensteiner H, Hartig A, Hamilton B, Ruis H, Erdmann R, Gurvitz A. Saccharomyces cerevisiae Pip2p-Oaf1p regulates PEX25 transcription through an adenine-less ORE. Eur J Biochem. 2003 May;270(9):2013-22.2003immunoblotting of various genes127090611
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Moreau JL, Lee M, Mahachi N, Vary J, Mellor J, Tsukiyama T, Goding CR. Regulated displacement of TBP from the PHO8 promoter in vivo requires Cbf1 and the Isw1 chromatin remodeling complex. Mol Cell. 2003 Jun;11(6):1609-20.2003EMSA, ChIP, single binding site128209731
Pierce M, Benjamin KR, Montano SP, Georgiadis MM, Winter E, Vershon AK. Sum1 and Ndt80 proteins compete for binding to middle sporulation element sequences that control meiotic gene expression. Mol Cell Biol. 2003 Jul;23(14):4814-25.2003microarray enrichment and EMSA128324692
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