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Reference Year Description PMID #Motifs in DB
V Abdel-Sater F, Iraqui I, Urrestarazu A, André B. The external amino acid signaling pathway promotes activation of Stp1 and Uga35/Dal81 transcription factors for induction of the AGP1 gene in Saccharomyces cerevisiae. Genetics. 2004 Apr;166(4):1727-39. 2004 single site mutagenesis and knockout 15126393 2
V Acton TB, Zhong H, Vershon AK. DNA-binding specificity of Mcm1: operator mutations that alter DNA-bending and transcriptional activities by a MADS box protein. Mol Cell Biol. 1997 Apr;17(4):1881-9. 1997 Mutational analysis 9121436 2
V Akache B, Turcotte B. New regulators of drug sensitivity in the family of yeast zinc cluster proteins. J Biol Chem. 2002 Jun 14;277(24):21254-60. Epub 2002 Apr 9. 2002 EMSA, single site mutagenesis 11943786 1
V Avram D, Leid M, Bakalinsky AT. Fzf1p of Saccharomyces cerevisiae is a positive regulator of SSU1 transcription and its first zinc finger region is required for DNA binding. Yeast. 1999 Apr;15(6):473-80. 1999 EMSA, site-turns-on-gene, DNase protection 10234785 1
V Badis G, Chan ET, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson CD, Gossett AJ, Hasinoff MJ, Warren CL, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo ZX, Clarke ND, Lieb JD, Ansari AZ, Nislow C, Hughes TR. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol Cell. 2008 Dec 26;32(6):878-87. 2008 PBM 19111667 114
V Baker CR, Tuch BB, Johnson AD. Extensive DNA-binding specificity divergence of a conserved transcription regulator. Proc Natl Acad Sci U S A. 2011 May 3;108(18):7493-8. Epub 2011 Apr 15. 2011 Sites found in coregulated genes' promoters, and in orthologous promoters 21498688 1
V Barbaric S, Münsterkötter M, Goding C, Hörz W. Cooperative Pho2-Pho4 interactions at the PHO5 promoter are critical for binding of Pho4 to UASp1 and for efficient transactivation by Pho4 at UASp2. Mol Cell Biol. 1998 May;18(5):2629-39. 1998 EMSA, DNase protection, DMS footprinting 9566882 1
V Becker B, Feller A, el Alami M, Dubois E, Piérard A. A nonameric core sequence is required upstream of the LYS genes of Saccharomyces cerevisiae for Lys14p-mediated activation and apparent repression by lysine. Mol Microbiol. 1998 Jul;29(1):151-63. 1998 EMSA, mutational analysis, multiple site analysis 9701810 1
V Berger MF, Philippakis AA, Qureshi AM, He FS, Estep PW 3rd, Bulyk ML. Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities. Nat Biotechnol. 2006 Nov;24(11):1429-35. Epub 2006 Sep 24. 2006 PBM 16998473 2
V Blaiseau PL, Thomas D. Multiple transcriptional activation complexes tether the yeast activator Met4 to DNA. EMBO J. 1998 Nov 2;17(21):6327-36. 1998 EMSA, 9799240 2
V Bonham AJ, Neumann T, Tirrell M, Reich NO. Tracking transcription factor complexes on DNA using total internal reflectance fluorescence protein binding microarrays. Nucleic Acids Res. 2009 Jul;37(13):e94. Epub 2009 May 31. 2009 TIRF-PBM 19487241 5
V Boorsma A, de Nobel H, ter Riet B, Bargmann B, Brul S, Hellingwerf KJ, Klis FM. Characterization of the transcriptional response to cell wall stress in Saccharomyces cerevisiae. Yeast. 2004 Apr 15;21(5):413-27. 2004 microArray Enrichment 15116342 1
V Challice JM, Segall J. Transcription of the 5 S rRNA gene of Saccharomyces cerevisiae requires a promoter element at +1 and a 14-base pair internal control region. J Biol Chem. 1989 Nov 25;264(33):20060-7. 1989 Methylation protection, single site analysis 2684967 1
V Chen X, Guo L, Fan Z, Jiang T. W-AlignACE: an improved Gibbs sampling algorithm based on more accurate position weight matrices learned from sequence and gene expression/ChIP-chip data. Bioinformatics. 2008 May 1;24(9):1121-8. Epub 2008 Mar 5. 2008 ChIP-chip 18325926 33
V Chu S, Herskowitz I. Gametogenesis in yeast is regulated by a transcriptional cascade dependent on Ndt80. Mol Cell. 1998 Apr;1(5):685-96. 1998 EMSA, mutational analysis, multiple site analysis 9660952 2

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